Module CS4440-KP04, CS4440

Duration

1 Semester

Turnus of offer

each winter semester

Credit points

4

Course of studies, specific fields and terms:

• Master CLS 2023, optional subject, computer science
• Master Molecular Life Science 2023, optional subject, mathematics / computer science
• Master CLS 2016, optional subject, computer science
• Master MES 2011, advanced curriculum, biophysics and biomedical optics
• Master CLS 2010, optional subject, computer science
• Master Computer Science 2012, compulsory, specialization field bioinformatics

Classes and lectures:

• Molecular Bioinformatics (exercise, 1 SWS)
• Molecular Bioinformatics (lecture, 2 SWS)

Workload:

• 45 hours in-classroom work
• 55 hours private studies
• 20 hours exam preparation

Contents of teaching:

• Methods for fast genome comparison
• Analysis of data describing gene expression profiles and sequence variation
• Advanced usage of biological databases (for sequences, motifs, structures, gene regulation and interactions)

Qualification-goals/Competencies:

• The students can apply indexing based software to Next Generation sequence data.
• They can use and design databases for molecularbiological research.
• They are able to detect statistically significant changes in Microarray data.

Grading through:

• written exam

Requires:

• Introduction to Bioinformatics (CS1400-KP04, CS1400)

Responsible for this module:

• Prof. Dr. rer. nat. Thomas Martinetz

Teacher:

• Institute for Neuro- and Bioinformatics
• Prof. Dr. Bernhard Haubold
• Prof. Dr. rer. nat. Thomas Martinetz
• MitarbeiterInnen des Instituts
• Prof. Lars Bertram

Literature:

• M. S. Waterman : Introduction to Computational Biology London: Chapman and Hall 1995
• B. Haubold, T. Wiehe : Introduction to Computational Biology Birkhäuser 2007
• R. Durbin, S. Eddy, A. Krogh, G. Mitchison : Biological sequence analysis. Probabilistic models Cambridge, MA: Cambridge University Press
• J. Setubal, J. Meidanis : Introduction to computational molecular Pacific Grove: PWS Publishing Company
• D. M. Mount : Bioinformatics - Sequence and Genome New York: Cold Spring Harbor Press

Language:

• English, except in case of only German-speaking participants

Notes:

Last Updated:

05.09.2022